“More than half of those who suffer acute radiation injury die within 30 days, not from the initial radioactive particles themselves but from the devastation they cause in the immune system, the gastrointestinal tract and other parts of the body,” said James Tour, Rice’s Chao Professor of Chemistry, director of Rice’s Carbon Nanotechnology Laboratory (CNL) and principal investigator on the grant. “Ideally, we’d like to develop a drug that can be administered within 12 hours of exposure and prevent deaths from what are currently fatal exposure doses of ionizing radiation.” […]

The new study was commissioned after preliminary tests found the drug was greater than 5,000 times more effective at reducing the effects of acute radiation injury than the most effective drugs currently available. […]

The drug is based on single-walled carbon nanotubes, hollow cylinders of pure carbon that are about as wide as a strand of DNA. To form NTH, Rice scientists coat nanotubes with two common food preservatives — the antioxidant compounds butylated hydroxyanisole (BHA) and butylated hydroxytoluene (BHT) — and derivatives of those compounds.

An interesting side benefit of the drug might be that it could also potentially help cancer patients who are undergoing radiation treatment.

More here: Feds fund study of drug that may prevent radiation injury

Since a journal article was submitted to the Royal Society of Chemistry, the U of Alberta researchers have already made the processor and unit smaller and have brought the cost of building a portable unit for genetic testing down to about $100 Cdn. In addition, these systems are also portable and even faster (they take only minutes). Backhouse, Elliott and McMullin are now demonstrating prototypes of a USB key-like system that may ultimately be as inexpensive as standard USB memory keys that are in common use – only tens of dollars. It can help with pandemic control and detecting and control tainted water supplies.

This development fits in with my belief that there should be widespread inexpensive blood, biomarker and genetic tests to help catch disease early and to develop an understanding of biomarker changes to track disease and aging development. We can also create adaptive clinical trials to shorten the development and approval process for new medical procedures

The device is now much smaller than size of a shoe-box (USB stick size) with the optics and supporting electronics filling the space around the microchip

Canadian scientists have succeeded in building the least expensive portable device for rapid genetic testing ever made. The cost of carrying out a single genetic test currently varies from hundreds to thousands of pounds, and the wait for results can take weeks. Now a group led by Christopher Backhouse, University of Alberta, Edmonton, have developed a reusable microchip-based system that costs just 500 (pounds) to build, is small enough to be portable, and can be used for point-of-care medical testing.

To keep costs down, ‘instead of using the very expensive confocal optics systems currently used in these types of devices we used a consumer-grade digital camera’, Backhouse explained.

The device can be adapted for used in many different genetic tests. ‘By making small changes to the system you could test for a person’s predisposition to cancer, carry out pharmacogenetic tests for adverse drug reactions or even test for pathogens in a water supply,’ said Backhouse.

The heart of the unit, the ‘chip,’ looks like a standard microscope slide etched with fine silver and gold lines. That microfabricated chip applies nano-biotechnologies within tiny volumes, sometimes working with only a few molecules of sample. Because of this highly integrated chip (containing microfluidics and microscale devices), the remainder of the system is inexpensive ($1,000) and fast.

There are many possible uses for such a portable genetic testing unit:

Backhouse notes that adverse drug reactions are a major problem in health care. By running a quick genetic test on a cancer patient, for example, doctors might pinpoint the type of cancer and determine the best drug and correct dosage for the individual.

Or health-care professionals can easily look for the genetic signature for a virus or E. coli – also making it useful for testing water quality.

“From a public health point of view, it would be wonderful during an epidemic to be able to do a quick test on a patient when they walk into an emergency room and be able to say, ‘you have SARS, you need to go into that (isolation) room immediately.’ ”

A family doctor might determine a person’s genetic predisposition to an illness during an office visit and advise the patient on preventative lifestyle changes.

FURTHER READING
Microfabrication technologies research at the University of Alberta

Rapid genetic analysis

In collaboration with the Glerum Lab we have been developing microchip based implementations of genetic amplification (PCR — the polymerase chain reaction) and capillary electrophoresis (CE) that are extremely fast.

- Cancer diagnostics

- Cell manipulation on a chip

- On chip PCR (polymerase chain reaction)

- Single cell PCR

- DNA Sequencing

The British-American biotech company Acambis reports the successful conclusion of Phase I trials of the universal flu vaccine in humans. The universal influenza vaccine has been pioneered by researchers from VIB and Ghent University. This vaccine is intended to provide protection against all ‘A’ strains of the virus that causes human influenza, including pandemic strains. Therefore, this vaccine will not need to be renewed annually.

What would make this new vaccine different from the ones already available is that it would target M2e, a conserved region of influenza “A” strains. Since that part doesn’t constantly mutate and about 2/3 of seasonal epidemics and all pandemics are due to type “A” strains, it could be a very efficient weapon against repeats of the “Spanish Flu” (1918–1919) that killed at least 50 million people worldwide. Only the future will tell if phase II and III trials are successful. 

You can learn more about the Lifeboat Foundation BioShield program here.

A 582,970 base pair sequence of DNA has been synthesized.

It’s the first time a genome the size of a bacterium has chemically been synthesized that’s about 20 times longer than [any DNA molecule] synthesized before.

This is a huge increase in capability. It has broad implications for DNA nanotechnology and synthetic biology.

It is particularly relevant for the lifeboat foundation bioshield project

This means that the Venter Institute is on the brink of sythesizing a new bacterial life.

The process to synthesize and assemble the synthetic version of the M. genitalium chromosome

began first by resequencing the native M. genitalium genome to ensure that the team was starting with an error free sequence. After obtaining this correct version of the native genome, the team specially designed fragments of chemically synthesized DNA to build 101 “cassettes” of 5,000 to 7,000 base pairs of genetic code. As a measure to differentiate the synthetic genome versus the native genome, the team created “watermarks” in the synthetic genome. These are short inserted or substituted sequences that encode information not typically found in nature. Other changes the team made to the synthetic genome included disrupting a gene to block infectivity. To obtain the cassettes the JCVI team worked primarily with the DNA synthesis company Blue Heron Technology, as well as DNA 2.0 and GENEART.

From here, the team devised a five stage assembly process where the cassettes were joined together in subassemblies to make larger and larger pieces that would eventually be combined to build the whole synthetic M. genitalium genome. In the first step, sets of four cassettes were joined to create 25 subassemblies, each about 24,000 base pairs (24kb). These 24kb fragments were cloned into the bacterium Escherichia coli to produce sufficient DNA for the next steps, and for DNA sequence validation.

The next step involved combining three 24kb fragments together to create 8 assembled blocks, each about 72,000 base pairs. These 1/8th fragments of the whole genome were again cloned into E. coli for DNA production and DNA sequencing. Step three involved combining two 1/8th fragments together to produce large fragments approximately 144,000 base pairs or 1/4th of the whole genome.

At this stage the team could not obtain half genome clones in E. coli, so the team experimented with yeast and found that it tolerated the large foreign DNA molecules well, and that they were able to assemble the fragments together by homologous recombination. This process was used to assemble the last cassettes, from 1/4 genome fragments to the final genome of more than 580,000 base pairs. The final chromosome was again sequenced in order to validate the complete accurate chemical structure.

The synthetic M. genitalium has a molecular weight of 360,110 kilodaltons (kDa). Printed in 10 point font, the letters of the M. genitalium JCVI-1.0 genome span 147 pages.

It seems to me that this is an assumption we can’t afford to make. It appears that 2007 TU24 is not going to strike the planet however it is possible that it will pass through a portion of earth’s magnetosphere. The repercussions of this transit can’t at this time be predicted with any certainty though they apparently range from no effect whatsoever to potentially catastrophic changes to weather, tectonic plate movement, the oceans and more.

Some might say that we’ve no need to be concerned — that this kind of near miss (and lets be frank here — in the vastness of even our solar system 1.4 lunar distances from earth is a near miss) is a freak occurrence. Don’t be so sure. Just one day later — that’s right, on January 30th it was thought possible — one might even say reasonably likely — that another asteroid will strike our second nearest celestial neighbor, Mars.

Recent updates based upon more detailed information about the path of asteroid 2007 WD5 have concluded that the odds of an impact occurring have now dropped to one in ten thousand making an impact exceptionally unlikely. However, it should be evident that our ability to identify objects less than 100 meters across is insufficient to provide us with enough time to do anything aside from evacuating the regions likely to be impacted by a collision with an incoming NEO.

More than one expert has come out and stated that NEO’s represent one of the most pressing potential mega-disasters threatening human — or even all — life on earth, yet this is a problem that could be solved within the capabilities of our technology. Between better early detection and development of a meaningful defensive strategy it is possible to protect humanity from this threat. All we need is the funding and the mandate from the people that would secure the resources required.

The researchers tested the system and demonstrated that it is capable of detecting a weak radiation source 15 feet from the sensors. A fully developed system could cover a nation with millions of cell phones equipped with radiation sensors able to detect even light residues of radioactive material. Because cell phones already contain global positioning locators, the network of phones would serve as a large scale tracking system that would require no intervention from individual users.

Even with some rather pessimistic assumptions, his calculations showed a pretty convincing return on investment. For only about US$ 2.50 per life year saved, Matheny predicts that we could mitigate the risk of humanity being killed off by a large asteroid. Maybe it’s just me, but it sounds pretty compelling.

Matheny also made a very good point that we all should ponder when we consider how our charitable giving and taxes gets spent. “We take extraordinary measures to protect some endangered species from extinction. It might be reasonable to take extraordinary measures to protect humanity from the same.”

For more coverage on this important paper please see the October 2007 issue of Risk Analysis and a recent edition of Nature News.

The computer was able to determine with 78 percent accuracy when a subject was thinking about a hammer, say, instead of a pair of pliers. With one particular subject, the accuracy reached 94 percent.

$?? Biological viruses…
$?? Environmental global warming…
$?? Extraterrestrial invasion…
$?? Governments abusive power…
$?? Nanotechnology gray goo…
$?? Nuclear holocaust…
$?? Simulation Shut Down if we live in one…
$?? Space Threats asteroids…
$?? Superintelligent AI un-friendly…
$?? Other
$100 million total

To vote, please reply below.

Results after 80 votes updated: Jan 13, 2008 11 AM EST

$23.9 Biological viruses…
$17.9 Space Threats asteroids…
$13.9 Governments abusive power…
$10.2 Nuclear holocaust…
$8.8 Nanotechnology gray goo…
$8.6 Other
$8.5 Superintelligent AI un-friendly…
$7.2 Environmental global warming…
$0.7 Extraterrestrial invasion…
$0.4 Simulation Shut Down if we live in one…
$100 million total

While his fame was first and foremost as a result of his triumphant effort on Everest in 1953, he was revered in Nepal for his efforts to help the Nepalese Sherpas improve their access to medicine, education and other modern conveniences and his legacy will continue in the form of those edifices in Nepal that exist as a result of his work.

Sir Ed, as he preferred to be called, was also something of an environmentalist. Upon a recent visit to the base of Everest he was so dismayed by the condition of the mountain (as a result of the decades of equipment including things such as spent oxygen bottles and massive amounts of inorganic and thus non-biodegradable gear) that he called for a fifty year moratorium on permits being issued to attempt ascents on the peak. He called upon the climbing community to make an effort to repair the damage to the fabled crag by packing out the detritus that was scarring his beloved mountain.

While the passing of this great man has relatively little to do with the mission of the Lifeboat Foundation, it seemed appropriate to report on his passing simply because he demonstrated that with sufficient will even things that are seemingly impossible are well within the grasp of those for whom failure is not an option.

At the Lifeboat Foundation we recognize this fact. We cannot and will not fail in our efforts to identify and defend against any and all threats to humanity. While it may sadden us to learn of the passing of a great adventurer like Sir Edmund Hillary, his accomplishments should serve as a source of motivation for each of us as we pursue our own personal Everests.

Following is a link to a wonderful video of the successful effort to summit the world’s highest peak. Consider for a moment how primitive this equipment is compared with what is used today. It is a great reminder of just how far we’ve come in a little over half a century and should prove to be a source of inspiration to us all. Video Link