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Medications change our gut microbiome in predictable ways

The bacteria in our poop are a reasonable representation of what’s living in our digestive system. To understand how different drugs can impact the gut microbiome, the team cultured microbial communities from nine donor fecal samples and systematically tested them with 707 different clinically relevant drugs.

The researchers examined changes in the growth of different bacterial species, the community composition, and the metabolome – the mix of small molecules called metabolites that microbes produce and consume. They found that 141 drugs altered the microbiome of the samples and even short-term treatments created enduring changes, entirely wiping out some microbial species. The primary force behind how the community responds to drug inhibition was competition over nutrients.

“The winners and losers among our gut bacteria can often be predicted by understanding how sensitive they are to the medications and how they compete for food,” said the first author on the paper. “In other words, drugs don’t just kill bacteria; they also reshuffle the ‘buffet’ in our gut, and that reshuffling shapes which bacteria win.”

Despite the complexity of the bacterial communities, the researchers were able to create data-driven computer models that accurately predicted how they would respond to a particular drug. They factored in the sensitivity of different bacterial species to that drug and the competitive landscape – essentially, who was competing with whom for which nutrients.

Their work provides a framework for predicting how a person’s microbial community might change with a given drug, and could help scientists find ways to prevent these changes or more easily restore a healthy gut microbiome in the future.


Our gut microbiome is made up of trillions of bacteria and other microbes living in our intestines. These help our bodies break down food, assist our immune system, send chemical signals to our brain, and potentially serve many other functions that researchers are still working to understand. When the microbiome is out of balance – with not enough helpful bacteria or the wrong combination of microbes – it can affect our whole body.

Real-time imaging captures what happens to cancer cells arriving in the brain

Metastasis occurs when cancer cells break away from the original tumor and travel through the bloodstream to form new tumors in other parts of the body. It is the leading cause of cancer-related death. Brain metastasis is particularly severe and affects 10–30% of patients with advanced lung, breast, and melanoma cancers.

While therapies exist for established brain tumors, there are limited strategies that directly target the very first cancer “seed cells” that enter and lodge in the brain.

Our brains, however, are equipped with immune cells called microglia that rapidly respond to pathogens and cancer cells by engulfing and digesting them. Yet scientists could not explain why microglia sometimes fail to destroy incoming seed cells because they could not watch this critical interaction in real-time in the living brain.

Exploring the role of intestinal pathogenic bacteria in metronidazole-induced bone loss: focus on Klebsiella variicola

Osteoporosis (OP), characterized by low bone mass and altered bone microstructure, affects over 200 million people globally, resulting in annual medical costs of approximately 17.9 billion dollars in USA and 37 billion euro per year in Europe [1]. Primary OP is primarily attributed to aging and postmenopausal estrogen deficiency [2]. However, more than half of patients diagnosed with osteoporosis are also associated with risk factors for secondary osteoporosis [3]. Pharmacological interventions are a significant contributor to bone loss, particularly as such treatments are often unavoidable in many clinical scenarios. Antibiotics, among the most prescribed medications worldwide, have long been used as a potent defense against infectious agents. However, their use has steadily increased to a level that raises significant concerns [4]. In addition to fostering antibiotic resistance, which can lead to more challenging infections, prolonged antibiotic use has been implicated in the development of a variety of conditions, including asthma, allergies, obesity, and inflammatory bowel disease [5]. Previous studies have demonstrated the effects of antibiotics like penicillin and neomycin on gut microbiota and bone metabolism [6, 7], and others have reported that systemic use of multiple antibiotics increases pathogenic bacterial abundance and oral bone loss [8]. Nevertheless, the effects of different classes of antibiotics on bone metabolism and their underlying mechanisms remain poorly understood.

Notably, it has been increasingly recognized that broad-spectrum antibiotics exert a detrimental impact on the gut microbiota (GM), leading to reduced diversity, alterations in the metabolome, and disruption of gut defenses [9]. GM dysbiosis has emerged as a significant pathological mechanism in antibiotic-induced extraintestinal diseases. Recent studies have provided growing evidence that GM alterations can significantly influence bone metabolism, suggesting that the microbiota may represent a potential target for preventing bone loss [10]. Certain gut probiotics, such as Lactobacillus and Akkermansia muciniphila, have been shown to promote bone mass, while some pathogenic bacteria contribute to bone loss [11]. Consequently, it is essential to investigate whether and how GM dysbiosis mediates antibiotic-induced bone loss.

Metronidazole (MET), a widely used drug for the treatment of anaerobic infections, parasites, and certain bacterial infections, is one of the most commonly prescribed antibiotics in clinical practice [12]. MET is generally well tolerated, with reported side effects typically ranging from mild to moderate, including nausea, abdominal pain, and diarrhea [13]. Recent studies have highlighted the critical associations between MET use and gut dysbiosis. A systematic review summarizing 129 studies related to antibiotics and GM has showed that the longest duration of post-antibiotic alterations in GM was observed after treatment with MET plus clarithromycin [14]. Another study investigating the effects of different antibiotics on the human microbiome have identified that MET treatment is associated with consistent changes in GM [15].

Registration of Brazil’s dengue vaccine officially announced

The Ministry of Health intends to begin administering doses in 2026, free of charge, through the SUS, the country’s national heal care network.

In a statement, Anvisa reported that the publication makes official the conclusion of the regulatory process and enables the production and sale of the vaccine, which will be offered exclusively through the public health system.

“The registration is a milestone in the fight against dengue in Brazil. The vaccine has undergone all the technical and regulatory stages required by health legislation, ensuring its safety, quality, and efficacy,” the text reads.

Priming for depression in a dimly lit world

St. Hedwig Hospital and Charité–Universitätsmedizin Berlin researchers report that repeated mornings spent under dim indoor light in healthy young adults raised afternoon and evening cortisol and reshaped sleep in ways known from depressive illnesses.

Depressive disorders are often linked with hyperactivity of the hypothalamic–pituitary–adrenal axis, with cortisol levels that stay elevated into the afternoon and early evening instead of reaching their lowest levels, typical of early evening.

Sleep in depressive illness often carries its own fingerprint. Changes in REM sleep and a shift of slow wave sleep from the beginning of the night toward later phases have been described as biological markers of depression.

Researchers detect early brain changes linked to future psychosis development

Researchers from the Yong Loo Lin School of Medicine, National University of Singapore (NUS Medicine), and NHG Health’s Institute of Mental Health (IMH) have mapped how brain networks differ in individuals at Clinical High Risk (CHR) for psychosis, providing a new perspective on the mechanisms underlying the disease onset.

Published in Molecular Psychiatry, the study utilized advanced neuroimaging methods to identify early, network-level changes in more than 3,000 individuals at varying levels of risk.

The study—led by Dr. Siwei Liu, Senior Research Scientist, and Associate Professor Juan Helen Zhou, Director, both at the Center for Translational Magnetic Resonance Research (TMR), NUS Medicine, and in collaboration with Associate Professor Jimmy Lee, Senior Consultant Psychiatrist and Clinician-Scientist at IMH—sought to determine how brain networks can reveal signs in young individuals with heightened clinical risk of developing psychosis.

First human DNA-cutting enzyme that senses physical tension discovered

An international research team has identified a human protein, ANKLE1, as the first DNA-cutting enzyme (nuclease) in mammals capable of detecting and responding to physical tension in DNA. This “tension-sensing” mechanism plays a vital role in maintaining genetic integrity during cell division—a process that, when disrupted, can lead to cancer and other serious diseases.

The study, titled “ANKLE1 processes chromatin bridges by cleaving mechanically stressed DNA,” published in Nature Communications, represents a major advance in the understanding of cellular DNA protection.

The research was conducted through a cross-disciplinary collaboration between Professor Gary Ying Wai Chan’s laboratory at the School of Biological Sciences, The University of Hong Kong (HKU) and Dr. Artem Efremov’s biophysics team at Shenzhen Bay Laboratory (SZBL), with additional contributions from researchers at the Hong Kong University of Science and Technology (HKUST) and the Francis Crick Institute in London.

How Two Russian Scientists Revolutionized the Way We Understand Aging and Cancer

A new article reflects on how two generations of scientists reshaped thinking on aging, linking hormonal regulation in the brain to molecular growth pathways. Mikhail Blagosklonny spent his career arguing that aging is not slow decay, but biology stuck in “overdrive.” Only now is it becoming wide

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