Lifeboat Foundation

For the first time, scientists have used machine learning to create brand-new enzymes, which are proteins that accelerate chemical reactions. This is an important step in the field of protein design, as new enzymes could have many uses across medicine and industrial manufacturing.

“Living organisms are remarkable chemists. Rather than relying on toxic compounds or extreme heat, they use enzymes to break down or build up whatever they need under gentle conditions. New enzymes could put renewable chemicals and biofuels within reach,” said senior author David Baker, professor of biochemistry at the University of Washington School of Medicine and recipient of the 2021 Breakthrough Prize in Life Sciences.

As reported Feb, 22 in the journal Nature, a team based at the Institute for Protein Design at UW Medicine devised machine-learning algorithms that can create light-emitting enzymes called luciferases. Laboratory testing confirmed that the new enzymes can recognize specific chemicals and emit light very efficiently. This project was led by two postdoctoral scholars in the Baker Lab, Andy Hsien-Wei Yeh and Christoffer Norn.

ATP, the compound essential for the functioning of photosynthetic organisms such as plants, algae, and cyanobacteria, is produced by an enzyme called “chloroplast ATP synthase” (CF_oCF₁). To control ATP production under varying light conditions, the enzyme uses a redox regulatory mechanism that modifies the ATP synthesis activity in response to changes in the redox state of cysteine (Cys) residues, which exist as dithiols under reducing (light) conditions, but forms a disulfide bond under oxidizing (dark) conditions. However, this mechanism has not yet been fully understood.

Now, in a study published in the Proceedings of the National Academy of Sciences, a team of researchers from Japan led by Prof. Toru Hisabori from Tokyo Institute of Technology (Tokyo Tech) has uncovered the role of the amino acid sequences present in CF_oCF₁, revealing how the enzyme regulates ATP production in photosynthetic organisms.

To understand how the conformation of the amino acids present in CF_oCF₁ contributes to the redox regulation mechanism, the researchers used the unicellular green alga, Chlamydomonas reinhardtii, to produce the enzyme. “By leveraging the powerful genetics of Chlamydomonas reinhardtii as a model organism for photosynthesis, we conducted a comprehensive biochemical analysis of the CF_oCF₁ molecule,” explains Prof. Hisabori.

Lignin is arguably the most abundant component of biomass that most people have never heard of. That may be about to change.

Many people are familiar with its biochemical cousin cellulose, a byproduct of paper and wood milling. But the same processes produce 50 million tons of lignin annually, industry experts estimate. Once distilled, 98 percent of the inky liquid is burned to produce electricity.

Scientists have been working to find more efficient and sustainable approaches to transform this naturally occurring polymer for use as a cleaner and greener building block to develop next generation materials.

In modern electronics, a large amount of heat is produced as waste during usage—this is why devices such as laptops and mobile phones become warm during use, and require cooling solutions. In the last decade, the concept of managing this heat using electricity has been tested, leading to the development of electrochemical thermal transistors—devices that can be used to control heat flow with electrical signals.

Currently, liquid-state thermal transistors are in use, but have critical limitations: chiefly, any leakage causes the device to stop working.

A research team at Hokkaido University lead by Professor Hiromichi Ohta at the Research Institute for Electronic science has developed the first solid-state electrochemical thermal transistor. Their invention, described in the journal Advanced Functional Materials, is much more stable than and just as effective as current liquid-state thermal transistors.

In a new study, researchers at the Indian Institute of Science (IISc) show how a brain-inspired image sensor can go beyond the diffraction limit of light to detect miniscule objects such as cellular components or nanoparticles invisible to current microscopes. Their novel technique, which combines optical microscopy with a neuromorphic camera and machine learning algorithms, presents a major step forward in pinpointing objects smaller than 50 nanometers in size. The results are published in Nature Nanotechnology.

Since the invention of optical microscopes, scientists have strived to surpass a barrier called the diffraction limit, which means that the microscope cannot distinguish between two objects if they are smaller than a certain size (typically 200–300 nanometers).

Their efforts have largely focused on either modifying the molecules being imaged, or developing better illumination strategies—some of which led to the 2014 Nobel Prize in Chemistry. “But very few have actually tried to use the detector itself to try and surpass this detection limit,” says Deepak Nair, Associate Professor at the Center for Neuroscience (CNS), IISc, and corresponding author of the study.

A multidisciplinary Northwestern University research team has created a groundbreaking transistor that is expected to be optimal for bioelectronics that are high-performance, lightweight, and flexible.

The new electrochemical transistor is compatible with both blood and water and has the ability to amplify significant signals, making it highly beneficial for biomedical sensing. This transistor could make it possible to develop wearable devices that can perform on-site signal processing right at the biology-device interface. Some potential applications include monitoring heart rate and levels of sodium and potassium in the blood, as well as tracking eye movements to study sleep disorders.

“All modern electronics use transistors, which rapidly turn current on and off,” said Tobin J. Marks, a co-corresponding author of the study. “Here we use chemistry to enhance the switching. Our electrochemical transistor takes performance to a totally new level. You have all the properties of a conventional transistor but far higher transconductance (a measure of the amplification it can deliver), ultra-stable cycling of the switching properties, a small footprint that can enable high-density integration, and easy, low-cost fabrication.”

Year 2021 Basically dmt may be a sorta chemical based computer that shapes our reality which could help understand why sometimes people have disorders of reality perception.

Do we see the world as it really is, or are we creating our own reality? We delve into the neuroscience behind the world that we experience.

Can we objectively tell how fast we are aging? With a good measure, scientists might be able to change our rate of aging to live longer and healthier lives. Researchers know that some people age faster than others and have been trying to concisely measure the internal physiological changes that lead to deteriorating health with age.

For years, researchers have been using clinical factors normally collected at physicals, like hypertension, cholesterol and weight, as indicators to predict aging. The idea was that these measures could determine whether someone is a fast or slow ager at any point in their life cycle. But more recently, researchers have theorized that there are other biological markers that reflect aging at the molecular and cellular level. This includes modifications to a person’s genetic material itself, or epigenetics.

Continue reading “Epigenetic and social factors both predict aging and health, but new research suggests one might be stronger” »

A prime target in the search for extraterrestrial life is Europa, a moon of Jupiter that’s covered with a sheet of salty ice. But what kind of salt is there? Researchers say they’ve created a new kind of salt crystal that could fill the bill, and perhaps raise hopes for finding life under the ice.

This salt crystal is both exotic and common: It’s actually table salt — also known as sodium chloride, with the chemical formula NaCl — but bound up with water molecules to form a hydrate that doesn’t exist naturally on Earth.