Peptidomics employs techniques of genomics, modern proteomics, state-of-the-art analytical chemistry and computational biology. In this Primer, Hellinger et al. describe the techniques and workflows required for peptide discovery and characterization and give an overview of biological and clinical applications of peptidomics.
We introduce quantum circuit learning (QCL) as an emerging regression algorithm for chemo-and materials-informatics. The supervised model, functioning on the rule of quantum mechanics, can process linear and smooth non-linear functions from small datasets (100 records). Compared with conventional algorithms, such as random forest, support vector machine, and linear regressions, the QCL can offer better predictions with some one-dimensional functions and experimental chemical databases. QCL will potentially help the virtual exploration of new molecules and materials more efficiently through its superior prediction performances.
There are high expectations that quantum computers may deliver revolutionary new possibilities for simulating chemical processes. This could have a major impact on everything from the development of new pharmaceuticals to new materials. Researchers at Chalmers University have now, for the first time in Sweden, used a quantum computer to undertake calculations within a real-life case in chemistry.
“Quantum computers could in theory be used to handle cases where electrons and atomic nuclei move in more complicated ways. If we can learn to utilize their full potential, we should be able to advance the boundaries of what is possible to calculate and understand,” says Martin Rahm, Associate Professor in Theoretical Chemistry at the Department of Chemistry and Chemical Engineering, who has led the study.
Within the field of quantum chemistry, the laws of quantum mechanics are used to understand which chemical reactions are possible, which structures and materials can be developed, and what characteristics they have. Such studies are normally undertaken with the help of super computers, built with conventional logical circuits. There is however a limit for which calculations conventional computers can handle. Because the laws of quantum mechanics describe the behavior of nature on a subatomic level, many researchers believe that a quantum computer should be better equipped to perform molecular calculations than a conventional computer.
On Earth Day 2023, we take a look at the state of the planet’s health. In Part 1, we assess the atmosphere.
In Part 1 of a two-part look at the state of Earth’s health, we look at changes in the planet’s atmosphere, both temperature and chemistry.
The field of plate tectonics is relatively new, and researchers are still uncovering the intricacies of geologic faults that cause earthquakes. One such fault, the Cascadia Subduction Zone, is a potentially catastrophic offshore fault located in the Pacific Northwest that has yet to reveal all its secrets. Despite its eerie calmness, it is capable of producing a massive magnitude-9 quake.
A study led by the University of Washington discovered seeps of warm, chemically distinct liquid shooting up from the seafloor about 50 miles off Newport, Oregon. Their research, published in the journal Science Advances.
Continue reading “Scientists Discover Mysterious Warm Liquid Spewing From Oregon Seafloor” »
Researchers have investigated how pores in a solid change its chemical reactions with other materials. The result could make steel production more environmentally friendly.
Texas A&M University scientists have discovered a 1,000% difference in the storage capacity of metal-free, water-based battery electrodes.
The metal-free water-based batteries are unique from those that utilize cobalt in their lithium-ion form. The research group’s focus on this type of battery stems from a desire for greater control over the domestic supply chain as cobalt and lithium are commonly sourced from outside the country. Additionally, the batteries’ safer chemistry could prevent fires.
Chemical engineering professor Dr. Jodie Lutkenhaus and chemistry assistant professor Dr. Daniel Tabor has published their findings about lithium-free batteries in Nature Materials.
Proteins are involved in every biological process, and use the energy in the body to alter their structure via mechanical movements. They are considered biological ‘nanomachines’ because the smallest structural change in a protein has a significant effect on biological processes. The development of nanomachines that mimic proteins has received much attention to implement movement in the cellular environment. However, there are various mechanisms by which cells attempt to protect themselves from the action of these nanomachines. This limits the realization of any relevant mechanical movement of nanomachines that could be applied for medical purposes.
The research team led by Dr. Youngdo Jeong from the Center for Advanced Biomolecular Recognition at the Korea Institute of Science and Technology (KIST, President Seok-Jin Yoon) has reported the development of a novel biochemical nanomachine that penetrates the cell membrane and kills the cell via the molecular movements of folding and unfolding in specific cellular environments, such as cancer cells, as a result of a collaboration with the teams of Prof. Sang Kyu Kwak from the School of Energy and Chemical Engineering and Prof. Ja-Hyoung Ryu from the Department of Chemistry at the Ulsan National Institute of Science and Technology (UNIST, President Yong Hoon Lee), and Dr. Chaekyu Kim of Fusion Biotechnology, Inc.
The joint research team focused on the hierarchical structure of proteins, in which the axis of the large structure and the mobile units are hierarchically separated. Therefore, only specific parts can move around the axis. Most existing nanomachines have been designed so that the mobile components and axis of the large structure are present on the same layer. Thus, these components undergo simultaneous movement, which complicates the desired control of a specific part.
In the last decade, we have witnessed biology bring us some incredible products and technologies: from mushroom-based packaging to animal-free hotdogs and mRNA vaccines that helped curb a global pandemic. The power of synthetic biology to transform our world cannot be overstated: this industry is projected to contribute to as much as a third of the global economic output by 2030, or nearly $30 trillion, and could impact almost every area of our lives, from the food we eat to the medicine we put in our bodies.
The leaders of this unstoppable bio revolution – many of whom you can meet at the SynBioBeta conference in Oakland, CA, on May 23–25 – are bringing the future closer every day through their ambitious vision, long-range strategy, and proactive oversight. These ten powerful women are shaping our world as company leaders, biosecurity experts, policymakers, and philanthropists focused on charting a new course to a more sustainable, equitable, clean, and safe future.
As an early pioneer in the high-throughput synthesis and sequencing of DNA, Emily Leproust has dedicated her life to democratizing gene synthesis to catapult the growth of synthetic biology applications from medicine, food, agriculture, and industrial chemicals to DNA data storage. She was one of the co-founders of Twist Bioscience in 2013 and is still leading the expanding company as CEO. To say that Twist’s silicon platform was a game-changer for the industry is an understatement. And it is no surprise that Leproust was recently honored with the BIO Rosalind Franklin Award for her work in the biobased economy and biotech innovation.
Humongous Fungus, a specimen of Armillaria ostoyae, has claimed the title of world’s largest single organism. Though it features honey mushrooms above ground, the bulk of this creature’s mass arises from its vast subterranean mycelial network of filamentous tendrils. It has spread across more than 2,000 acres of soil and weighs over 30,000 metric tons. Yet I would contend that Humongous Fungus represents a mere microcosm of the world’s true largest organism, a creature that I will call Cyborg Earth. What is Cyborg Earth? Eastern religions have suggested that all life is fundamentally interconnected. Cyborg Earth represents an extension of this concept.
All across the globe, biological life thrives. Quintillions upon quintillions of biomolecular computations happen every second, powering all life. Mycoplasma bacteria. Communities of leafcutter ants. The Humongous Fungus. Beloved beagles. Seasonal influenza viruses. Parasitic roundworms. Families of Canadian elk. Vast blooms of cyanobacteria. Humanity. Life works because of complexity that arises from simplicity that in turn arises from whatever inscrutable quantum mechanical rules lay beneath the molecular scale.
All creatures rearrange atoms in various ways. Termites and beavers rearrange larger bunches of atoms than most organisms. As humans progressed from paleolithic to metalwork to industrialization and then to the space age, information revolution, and era of artificial intelligence, they learned to converse with the atoms around them in an ever more complex fashion. We are actors in an operatic performance, we are subroutines of evolution, we are interwoven matryoshka patterns, an epic chemistry.
