Lifeboat Foundation

Modern medicine forces bacteria to adapt: in response to antibiotic treatment, they either increase their fitness or die out. Whether a bacterial population survives or not depends on a combination of its genetics and environment—the antibiotic concentration—at a given moment. Now Suman Das of the University of Cologne, Germany, and colleagues simulate the effect on adaptation of an environment that is constantly changing [1]. Using a model that describes how slow-moving disordered systems respond to external forces, the researchers find that microbe evolution in changing drug concentrations exhibits hysteresis and memory formation. They use analytical methods and numerical simulations to connect these statistical physics concepts to bacterial drug resistance.

The team’s model examines changes in a bacterial population’s genetic sequences. By combining data on bacterial growth rates with statistical tools, the researchers describe how the bacterial genome can store information about both present and past drug concentrations. Their simulations start with a genetic sequence optimized for a certain antibiotic concentration. They then track how the sequence mutates when the concentration shifts to another value. When the concentration increases and then reduces to a lower value, the genetic route taken on the downward path depends on the changes on the upward path. How different the mutation routes are depends on the rate of concentration change.

The researchers find that this behavior mimics that of disordered systems driven by external forces, such as ferromagnetic materials subjected to magnetic fields or amorphous materials subjected to a shearing force. They say that while their approach focuses on the evolution of drug resistance, the framework can be adapted to other problems in evolutionary biology that involve changing environmental parameters.

Small but mighty, lysosomes play a surprisingly important role in cells despite their diminutive size. Making up only 1–3% of the cell by volume, these small sacs are the cell’s recycling centers, home to enzymes that break down unneeded molecules into small pieces that can then be reassembled to form new ones. Lysosomal dysfunction can lead to a variety of neurodegenerative or other diseases, but without ways to better study the inner contents of lysosomes, the exact molecules involved in diseases—and therefore new drugs to target them—remain elusive.

A new method, reported in Nature on Sept. 21, allows scientists to determine all the molecules present in the lysosomes of any cell in mice. Studying the contents of these molecular recycling centers could help researchers learn how the improper degradation of cellular materials leads to certain diseases. Led by Stanford University’s Monther Abu-Remaileh, institute scholar at Sarafan ChEM-H, the study’s team also learned more about the cause for a currently untreatable neurodegenerative disease known as Batten disease, information that could lead to new therapies.

“Lysosomes are fascinating both fundamentally and clinically: they supply the rest of the cell with nutrients, but we don’t always know how and when they supply them, and they are the places where many diseases, especially those that affect the brain, start,” said Abu-Remaileh, who is an assistant professor of chemical engineering and of genetics.

The genetic encoding of ncAAs with distinct chemical, biological, and physical properties requires the engineering of bioorthogonal translational machinery, consisting of an evolved aminoacyl-tRNA synthetase/tRNA pair and a “blank” codon. To achieve this, the researchers mimicked the ibis’ ability to synthesize sTyr and incorporate it into proteins.

The Xiao lab employed a mutant amber stop codon to encode the desired sulfotransferase, resulting in a completely autonomous mammalian cell line capable of biosynthesizing sTyr and incorporating it with great precision into proteins.

These engineered cells, the authors wrote, can produce “site-specifically sulfated proteins at a higher yield than cells fed exogenously with the highest level of sTyr reported in the literature.” They used the cells to prepare highly potent thrombin inhibitors with site-specific sulfation.

Summary: Researchers have discovered 69 genetic variants associated with musical beat synchronization, or the ability to move in sync with the beat of music.

Source: Vanderbilt University.

The first large-scale genomic study of musicality — published on the cover of today’s Nature Human Behaviour — identified 69 genetic variants associated with beat synchronization, meaning the ability to move in synchrony with the beat of music.

Don’t think about living forever. Just think about never getting sick, ever again.

At least that’s how Aubrey de Grey would like you to contextualize his work. The notoriously bearded biomedical gerontologist is the scientific spark that lights up so many all-caps “immortality” headlines. De Grey wants to increase human longevity so significantly that death could become a thing of the past, a condition people fell prey to before they developed the medical technology to stop it. It’s been the center of his work for approximately 20 years.

De Grey started as a software guy at the genetics department of Cambridge University in 1992, maintaining a database of genetic information on fruit flies. In 1999 he published a book called “The Mitochondrial Free Radical Theory of Aging,” where he first laid out the key idea we know him for today: preventing damage to mitochondrial DNA ought to make people live much longer. The idea was so well-received that Cambridge awarded him a PhD the following year. De Grey condensed his thesis to a sound byte in a 2007 interview: “[Humans] are machines, and aging is the wearing out of a machine, the accumulation of damage to a machine, and hence potentially fixable.”

Researchers have discovered a new structure of telomeric DNA, which could be key to living longer.

Researchers have discovered a new structure of telomeric DNA

DNA, or deoxyribonucleic acid, is a molecule composed of two long strands of nucleotides that coil around each other to form a double helix. It is the hereditary material in humans and almost all other organisms that carries genetic instructions for development, functioning, growth, and reproduction. Nearly every cell in a person’s body has the same DNA. Most DNA is located in the cell nucleus (where it is called nuclear DNA), but a small amount of DNA can also be found in the mitochondria (where it is called mitochondrial DNA or mtDNA).

It tastes like a tomato, smells like a tomato, and even looks (mostly) like a tomato. There’s just one catch: It’s purple.

Join us on Patreon!
https://www.patreon.com/MichaelLustgartenPhD

Quantify Discount Link (At-Home Blood Testing)
https://getquantify.io/mlustgarten.

Continue reading “Blood Test #5 in 2022: Supplements, Diet” »

These 15 robots may demonstrate that the concept is viable.

Personal robots have been a common trope in sci-fi for many decades. Their apparent plausibility has made many sci-fi enthusiasts wonder when they may become a reality.

Continue reading “Where are all the personal robots we were promised?” »