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Archive for the ‘supercomputing’ category: Page 46

Jun 28, 2020

Ohio Supercomputer Center Researchers Analyse Twitter Posts Revealing Polarization in Congress on COVID-19

Posted by in categories: biotech/medical, government, robotics/AI, supercomputing

June 25, 2020 — The rapid politicization of the COVID-19 pandemic can be seen in messages members of the U.S. Congress sent about the issue on the social media site Twitter, a new analysis found.

Using artificial intelligence and resources from the Ohio Supercomputer Center, researchers conducted an analysis that covered all 30,887 tweets that members sent about COVID-19 from the first one on Jan. 17 through March 31.

Jun 28, 2020

World’s fastest supercomputer fights coronavirus

Posted by in categories: biotech/medical, supercomputing

The newly crowned Fugaku system is analysing droplet spread in offices and public transport.

Jun 28, 2020

Nvidia confirms AMD-powered supercomputer now part of 5-exaflops giant

Posted by in category: supercomputing

Nvidia has built its very own supercomputer, for some reason.

Jun 23, 2020

Fugaku, world’s fastest supercomputer, searches for coronavirus treatment

Posted by in categories: biotech/medical, supercomputing

Japanese machine can perform more than 415 quadrillion computations a second and has already worked out how breath droplets spread.

Jun 23, 2020

Fifty perfect photons for ‘quantum supremacy’

Posted by in categories: quantum physics, supercomputing

Fifty is a critical number for quantum computers capable of solving problems that classic supercomputers cannot solve. Proving quantum supremacy requires at least 50 qubits. For quantum computers working with light, it is equally necessary to have at least 50 photons. And what’s more, these photons have to be perfect, or else they will worsen their own quantum capabilities. It is this perfection that makes it hard to realize. Not impossible, however, which scientists of the University of Twente have demonstrated by proposing modifications of the crystal structure inside existing light sources. Their findings are published in Physical Review A.

Photons are promising in the world of , with its demands of entanglement, superposition and interference. These are properties of qubits, as well. They enable building a computer that operates in a way that is entirely different from making calculations with standard bits that represent ones and zeroes. For many years now, researchers have predicted quantum computers able to solve very , like instantly calculating all vibrations in a complex molecule.

The first proof of quantum supremacy is already there, accomplished with and on very complicated theoretical problems. About 50 quantum building blocks are needed as a minimum, whether they are in the form of photons or qubits. Using photons may have advantages over qubits: They can operate at room temperatures and they are more stable. There is one important condition: the photons have to be perfect in order to get to the critical number of 50. In their new paper, UT scientists have now demonstrated that this is feasible.

Jun 22, 2020

Japanese supercomputer is world’s fastest

Posted by in categories: robotics/AI, supercomputing

The supercomputer Fugaku – jointly developed by RIKEN and Fujitsu, based on Arm technology – has taken first place on Top500, a ranking of the world’s fastest supercomputers.

It swept other rankings too – claiming the top spot on HPCG, a ranking of supercomputers running real-world applications; and HPL-AI, which ranks supercomputers based on their performance in artificial intelligence applications; and Graph 500, which ranks systems based on data-intensive loads.

This is the first time in history that the same supercomputer has achieved number one on Top500, HPCG, and Graph500 simultaneously. The awards were announced today at the ISC High Performance 2020 Digital, an international high-performance computing conference.

Jun 20, 2020

Engineers Put Tens of Thousands of Artificial Brain Synapses on a Single Chip for Portable AI Devices

Posted by in categories: robotics/AI, supercomputing

MIT engineers have designed a “brain-on-a-chip,” smaller than a piece of confetti, that is made from tens of thousands of artificial brain synapses known as memristors — silicon-based components that mimic the information-transmitting synapses in the human brain.

The researchers borrowed from principles of metallurgy to fabricate each memristor from alloys of silver and copper, along with silicon. When they ran the chip through several visual tasks, the chip was able to “remember” stored images and reproduce them many times over, in versions that were crisper and cleaner compared with existing memristor designs made with unalloyed elements.

Their results, published on June 8, 2020, in the journal Nature Nanotechnology, demonstrate a promising new memristor design for neuromorphic devices — electronics that are based on a new type of circuit that processes information in a way that mimics the brain’s neural architecture. Such brain-inspired circuits could be built into small, portable devices, and would carry out complex computational tasks that only today’s supercomputers can handle.

Jun 19, 2020

Lab finds 125 naturally occurring compounds with potential against COVID-19

Posted by in categories: biotech/medical, supercomputing

The Baudry Lab at The University of Alabama in Huntsville (UAH) has identified 125 naturally occurring compounds that have a computational potential for efficacy against the COVID-19 virus from the first batch of 50,000 rapidly assessed by a supercomputer.

It’s the first time a supercomputer has been used to assess the treatment efficacy of naturally occurring compounds against the proteins made by COVID-19. Located in UAH’s Shelby Center for Science and Technology, the lab is searching for potential precursors to drugs that will help combat the global pandemic using the Hewlett Packard Enterprise (HPE) Cray Sentinel supercomputer.

The UAH team is led by molecular biophysicist Dr. Jerome Baudry (pronounced Bō-dre), the Mrs. Pei-Ling Chan Chair in the Department of Biological Sciences. Dr. Baudry is video blogging about his COVID-19 research journey using HPE’s Cray Sentinel system. His research is in collaboration with the National Center for Natural Products Research at the University of Mississippi School of Pharmacy and HPE.

Jun 13, 2020

Sugar coating locks and loads coronavirus for infection

Posted by in categories: biotech/medical, supercomputing

They say you can’t judge a book by its cover. But the human immune system does just that when it comes to finding and attacking harmful microbes such as the coronavirus. It relies on being able to recognize foreign intruders and generate antibodies to destroy them. Unfortunately, the coronavirus uses a sugary coating of molecules called glycans to camouflage itself as harmless from the defending antibodies.

Simulations on the National Science Foundation (NSF)-funded Frontera supercomputer at the Texas Advanced Computing Center (TACC) have revealed the atomic makeup of the coronavirus’s sugary shield. What’s more, simulation and modeling show that glycans also prime the coronavirus for infection by changing the shape of its spike . Scientists hope this basic research will add to the arsenal of knowledge needed to defeat the COVID-19 virus.

Sugar-like molecules called glycans coat each of the 65-odd spike proteins that adorn the coronavirus. Glycans account for about 40 percent of the spike protein by weight. The spike proteins are critical to cell infection because they lock onto the , giving the virus entry into the cell.

Jun 10, 2020

Machine learning predicts nanoparticle structure and dynamics

Posted by in categories: biotech/medical, chemistry, nanotechnology, robotics/AI, supercomputing

Researchers at the Nanoscience Center and at the Faculty of Information Technology at the University of Jyväskylä in Finland have demonstrated that new distance-based machine learning methods developed at the University of Jyväskylä are capable of predicting structures and atomic dynamics of nanoparticles reliably. The new methods are significantly faster than traditional simulation methods used for nanoparticle research and will facilitate more efficient explorations of particle-particle reactions and particles’ functionality in their environment. The study was published in a Special Issue devoted to machine learning in the Journal of Physical Chemistry on May 15, 2020.

The new methods were applied to ligand-stabilized metal , which have been long studied at the Nanoscience Center at the University of Jyväskylä. Last year, the researchers published a method that is able to successfully predict binding sites of the stabilizing ligand molecules on the nanoparticle surface. Now, a new tool was created that can reliably predict based on the atomic structure of the particle, without the need to use numerically heavy electronic structure computations. The tool facilitates Monte Carlo simulations of the atom dynamics of the particles at elevated temperatures.

Potential energy of a system is a fundamental quantity in computational nanoscience, since it allows for quantitative evaluations of system’s stability, rates of chemical reactions and strengths of interatomic bonds. Ligand-stabilized metal nanoparticles have many types of interatomic bonds of varying chemical strength, and traditionally the energy evaluations have been done by using the so-called density functional theory (DFT) that often results in numerically heavy computations requiring the use of supercomputers. This has precluded efficient simulations to understand nanoparticles’ functionalities, e.g., as catalysts, or interactions with biological objects such as proteins, viruses, or DNA. Machine learning methods, once trained to model the systems reliably, can speed up the simulations by several orders of magnitude.

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